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KBDOCK database


Description Size File
ER diagram 26K
SQL table structure 2K
kbdock.pdb 1M
kbdock.pdb_chain 27M
kbdock.pdb_chain_res 377M
kbdock.pdb_pfam_dom 30M
kbdock.dom_res_cons 323M
kbdock.pfam 957K
kbdock.pfam_center 82K
kbdock.pfam_neigh 69M
kbdock.dfbs 210K
kbdock.intact 5.8M
kbdock.intact_res_pair 49.6M
kbdock.intact_3d 15M

Family superpositions (representative interactions only)


Description * Size File
Inter-chain hetero DDIs 418M
Inter-chain homo DDIs 952M
Intra-chain hetero DDIs 301M
Intra-chain homo DDIs 37.4M
Inter-chain DPIs 1.5M
Intra-chain DPIs 1.1M
DSPIs 120M
DLPIs 117M

* A DDI is an interaction between two Pfam domains
   A DPI is an interaction between a Pfam domain and a Pfam peptide
   A DSPI is an interaction between a Pfam domain and an unannotated structure of length >2 and ≤25
   A DLPI is an interaction between a Pfam domain and an unannotated structure of length >25
   Consult the statistics page for more information

Family superpositions (all interactions)


Description Size File
Inter-chain hetero DDIs 2.2G
Inter-chain homo DDIs * 319K
Intra-chain hetero DDIs 2.4G
Intra-chain homo DDIs 252M
Inter-chain DPIs 9.9M
Intra-chain DPIs 8.8M
DSPIs 262M
DLPIs 195M

* This file contains URLs to the data files (16G). Please use WGET to download them.

Pfam domain structures


Description Size File
Representative Pfam domain structures 117M
Pfam domain structures  8.8G
DSSP files of Pfam domain structures  169M

TCL scripts for VMD visualisation of KBDOCK interactions


Description Size File
Inter-chain DDIs and DPIs 4.6K
Intra-chain DDIs and DPIs 5.8K
Interactions between domains and unannotated peptides 5.3K