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KBDOCK database


Description Size File
ER diagram 26K
SQL table structure 11K
kbdock.pdb 754K
kbdock.pdb_chain 13M
kbdock.pdb_chain_res 246M
kbdock.pdb_pfam_dom 17M
kbdock.dom_res_cons 207M
kbdock.pfam 908K
kbdock.pfam_center 67K
kbdock.pfam_neigh 4.2M
kbdock.dfbs 141K
kbdock.intact 4.2M
kbdock.intact_res_pair 37M
kbdock.intact_3d 11M

Family superpositions (representative interactions only)


Description * Size File
Inter-chain hetero DDIs 224M
Inter-chain homo DDIs 655M
Intra-chain hetero DDIs 132M
Intra-chain homo DDIs 19M
Inter-chain DPIs 939K
Intra-chain DPIs 491K
DSPIs 75M
DLPIs 59M

* A DDI is an interaction between two Pfam domains
   A DPI is an interaction between a Pfam domain and a Pfam peptide
   A DSPI is an interaction between a Pfam domain and an unannotated structure of length >2 and ≤25
   A DLPI is an interaction between a Pfam domain and an unannotated structure of length >25
   Consult the statistics page for more information

Family superpositions (all interactions)


Description Size File
Inter-chain hetero DDIs 1.6G
Inter-chain homo DDIs * 284K
Intra-chain hetero DDIs 1.6G
Intra-chain homo DDIs 163M
Inter-chain DPIs 6.6M
Intra-chain DPIs 8.8M
DSPIs 169M
DLPIs 132M

* This file contains URLs to the data files (13G). Please use WGET to download them.

Pfam domain structures


Description Size File
Representative Pfam domain structures 132M
Pfam domain structures  6.1G
DSSP files of Pfam domain structures  1.5M

TCL scripts for VMD visualisation of KBDOCK interactions


Description Size File
Inter-chain DDIs and DPIs 4.6K
Intra-chain DDIs and DPIs 5.8K
Interactions between domains and unannotated peptides 5.3K