KBDOCK is a 3D database system that defines and spatially clusters protein
binding sites for knowledge-based protein docking.
KBDOCK integrates protein domain-domain interaction information from
3DID
and sequence alignments from
PFAM
together with structural information from the
PDB
in order to analyse the spatial arrangements of DDIs by Pfam family,
and to propose structural templates for protein docking.
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